Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm22323-201ENSMUST00000103832 109 ntBASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm25668-201ENSMUST00000157700 129 ntBASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Chmp6P0C0A3 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm14109-201ENSMUST00000118814 309 ntBASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.16□□□□□ -0.3
Chmp6P0C0A3 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Gm10782-202ENSMUST00000223775 1480 ntBASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Chmp6P0C0A3 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm6211-201ENSMUST00000147973 4275 ntBASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm44207-201ENSMUST00000204568 1424 ntBASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Chmp6P0C0A3 Gm24934-201ENSMUST00000103764 111 ntBASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms