Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.8□□□□□ -0.36
TnfP06804 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.8□□□□□ -0.36
TnfP06804 AC159819.2-201ENSMUST00000216151 342 ntBASIC12.8□□□□□ -0.36
TnfP06804 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.8□□□□□ -0.36
TnfP06804 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.8□□□□□ -0.36
TnfP06804 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.8□□□□□ -0.36
TnfP06804 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.8□□□□□ -0.36
TnfP06804 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
TnfP06804 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.8□□□□□ -0.36
TnfP06804 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.8□□□□□ -0.36
TnfP06804 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
TnfP06804 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
TnfP06804 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Gm20633-201ENSMUST00000176742 2831 ntBASIC12.79□□□□□ -0.36
TnfP06804 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
TnfP06804 Gm14263-201ENSMUST00000117955 746 ntBASIC12.79□□□□□ -0.36
TnfP06804 Gm13461-201ENSMUST00000120980 662 ntBASIC12.79□□□□□ -0.36
TnfP06804 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC12.79□□□□□ -0.36
TnfP06804 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.79□□□□□ -0.36
TnfP06804 Gm45118-201ENSMUST00000208928 825 ntBASIC12.79□□□□□ -0.36
TnfP06804 AC154276.3-201ENSMUST00000227643 998 ntBASIC12.79□□□□□ -0.36
TnfP06804 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.79□□□□□ -0.36
TnfP06804 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC12.79□□□□□ -0.36
TnfP06804 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
TnfP06804 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.79□□□□□ -0.36
TnfP06804 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC12.79□□□□□ -0.36
TnfP06804 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
TnfP06804 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TnfP06804 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
TnfP06804 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
TnfP06804 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
TnfP06804 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.78□□□□□ -0.36
TnfP06804 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.78□□□□□ -0.36
TnfP06804 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.78□□□□□ -0.36
TnfP06804 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.78□□□□□ -0.36
TnfP06804 Gm12176-201ENSMUST00000121420 875 ntBASIC12.78□□□□□ -0.36
TnfP06804 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
TnfP06804 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
TnfP06804 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
TnfP06804 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gm19287-201ENSMUST00000203190 358 ntBASIC12.78□□□□□ -0.36
TnfP06804 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.78□□□□□ -0.36
TnfP06804 Gm18393-201ENSMUST00000208349 1131 ntBASIC12.78□□□□□ -0.36
TnfP06804 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gm2553-201ENSMUST00000215986 605 ntBASIC12.78□□□□□ -0.36
TnfP06804 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.78□□□□□ -0.36
TnfP06804 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
TnfP06804 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TnfP06804 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.78□□□□□ -0.36
TnfP06804 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms