Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm12151-201ENSMUST00000121374 290 ntBASIC9.98□□□□□ -0.81
Hmgb3O54879 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm27838-201ENSMUST00000184829 128 ntBASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm44397-201ENSMUST00000195950 113 ntBASIC9.98□□□□□ -0.81
Hmgb3O54879 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 AC156560.2-201ENSMUST00000221232 264 ntBASIC9.98□□□□□ -0.81
Hmgb3O54879 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC9.98□□□□□ -0.81
Hmgb3O54879 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Gm42913-201ENSMUST00000197936 1853 ntBASIC9.98□□□□□ -0.81
Hmgb3O54879 Fbxo32-201ENSMUST00000022986 6976 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Hmgb3O54879 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Ppip5k1-205ENSMUST00000110628 5404 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm37014-201ENSMUST00000194723 2253 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm23935-201ENSMUST00000102303 57 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm24270-201ENSMUST00000102326 57 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm24245-201ENSMUST00000157318 57 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm23363-201ENSMUST00000175024 79 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm43575-201ENSMUST00000196420 516 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm42612-201ENSMUST00000197986 623 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm43170-201ENSMUST00000199827 612 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm43416-201ENSMUST00000201916 1015 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Zzef1-207ENSMUST00000172220 11249 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
Hmgb3O54879 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC9.97□□□□□ -0.81
Hmgb3O54879 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Hmgb3O54879 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Inpp4a-203ENSMUST00000114933 3004 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
Hmgb3O54879 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.81
Hmgb3O54879 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Trim2-205ENSMUST00000107693 5755 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC9.96□□□□□ -0.81
Hmgb3O54879 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Zfp827-203ENSMUST00000119254 4549 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
Hmgb3O54879 Gm8805-201ENSMUST00000117848 313 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Gm5687-201ENSMUST00000118252 640 ntBASIC9.96□□□□□ -0.82
Hmgb3O54879 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
Hmgb3O54879 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 122.2 ms