Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Sdc4O35988 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC12.45□□□□□ -0.42
Sdc4O35988 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sdc4O35988 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
Sdc4O35988 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.44□□□□□ -0.42
Sdc4O35988 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sdc4O35988 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Sdc4O35988 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
Sdc4O35988 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm11941-201ENSMUST00000119904 610 ntBASIC12.44□□□□□ -0.42
Sdc4O35988 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm23085-201ENSMUST00000157849 293 ntBASIC12.44□□□□□ -0.42
Sdc4O35988 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
Sdc4O35988 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm4482-201ENSMUST00000200876 742 ntBASIC12.44□□□□□ -0.42
Sdc4O35988 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm5369-201ENSMUST00000217499 588 ntBASIC12.44□□□□□ -0.42
Sdc4O35988 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC12.44□□□□□ -0.42
Sdc4O35988 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.44□□□□□ -0.42
Sdc4O35988 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Sdc4O35988 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc4O35988 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc4O35988 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Sdc4O35988 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc4O35988 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc4O35988 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm24891-201ENSMUST00000104391 136 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Gm5419-201ENSMUST00000119301 527 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Gm15610-201ENSMUST00000120584 195 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm7207-201ENSMUST00000211575 1067 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Gm8959-201ENSMUST00000213150 571 ntBASIC12.43□□□□□ -0.42
Sdc4O35988 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.43□□□□□ -0.42
Sdc4O35988 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Sdc4O35988 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc4O35988 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.42□□□□□ -0.42
Sdc4O35988 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Sdc4O35988 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc4O35988 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms