Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Vps53Q8CCB4 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm9083-201ENSMUST00000120423 819 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm25043-201ENSMUST00000158604 212 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm8018-201ENSMUST00000173536 789 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm25732-201ENSMUST00000175168 60 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm25700-201ENSMUST00000177693 110 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm8959-201ENSMUST00000213150 571 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm45925-201ENSMUST00000218882 744 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm8712-201ENSMUST00000221090 701 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 AC113031.8-201ENSMUST00000227856 631 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 AC164426.2-201ENSMUST00000225993 2492 ntBASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Vps53Q8CCB4 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Gm18263-201ENSMUST00000220846 1928 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Gm8856-201ENSMUST00000185254 1144 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Gm44651-201ENSMUST00000207343 372 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 AC108416.1-202ENSMUST00000228927 1201 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Paupar-201ENSMUST00000194826 3482 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 AC157950.1-201ENSMUST00000217561 2168 ntBASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms