Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm24891-201ENSMUST00000104391 136 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm6335-201ENSMUST00000118081 1194 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm7816-201ENSMUST00000119884 1194 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm15542-201ENSMUST00000121585 1194 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Cd63-ps-202ENSMUST00000154992 717 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm2965-201ENSMUST00000198365 343 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm7207-201ENSMUST00000211575 1067 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm5369-201ENSMUST00000217499 588 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 AC121960.1-201ENSMUST00000227982 564 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Gm9072-201ENSMUST00000218390 1514 ntBASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Ubfd1Q78JW9 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm11509-201ENSMUST00000117358 325 ntBASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm22902-201ENSMUST00000158488 302 ntBASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm5706-201ENSMUST00000181525 993 ntBASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm8100-201ENSMUST00000182906 988 ntBASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm18893-201ENSMUST00000198416 943 ntBASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Ubfd1Q78JW9 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Ubfd1Q78JW9 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms