Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Snord83b-201ENSMUST00000104546 94 ntBASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm17208-201ENSMUST00000168388 535 ntBASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm4034-201ENSMUST00000187674 480 ntBASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm37042-201ENSMUST00000193816 581 ntBASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm42627-201ENSMUST00000197347 224 ntBASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC11.77□□□□□ -0.52
Col28a1Q2UY11 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col28a1Q2UY11 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col28a1Q2UY11 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col28a1Q2UY11 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col28a1Q2UY11 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gm11637-201ENSMUST00000120601 592 ntBASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gm43758-201ENSMUST00000199500 367 ntBASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gm18935-201ENSMUST00000212692 664 ntBASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Snora73a-201ENSMUST00000082453 205 ntBASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col28a1Q2UY11 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm37466-201ENSMUST00000195692 652 ntBASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm43133-201ENSMUST00000197472 463 ntBASIC11.76□□□□□ -0.53
Col28a1Q2UY11 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 77.8 ms