Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Gm7851-201ENSMUST00000117574 323 ntBASIC13.12□□□□□ -0.31
CiitaP79621 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.12□□□□□ -0.31
CiitaP79621 Gm11941-201ENSMUST00000119904 610 ntBASIC13.12□□□□□ -0.31
CiitaP79621 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Gm27390-201ENSMUST00000184516 176 ntBASIC13.12□□□□□ -0.31
CiitaP79621 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Gm34767-201ENSMUST00000191813 1062 ntBASIC13.12□□□□□ -0.31
CiitaP79621 Gm17931-201ENSMUST00000208132 634 ntBASIC13.12□□□□□ -0.31
CiitaP79621 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC13.12□□□□□ -0.31
CiitaP79621 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CiitaP79621 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CiitaP79621 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Gm37660-201ENSMUST00000192754 1732 ntBASIC13.11□□□□□ -0.31
CiitaP79621 AC173482.6-201ENSMUST00000225889 1741 ntBASIC13.11□□□□□ -0.31
CiitaP79621 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Gm13045-201ENSMUST00000119019 712 ntBASIC13.11□□□□□ -0.31
CiitaP79621 Gm12501-201ENSMUST00000119163 529 ntBASIC13.11□□□□□ -0.31
CiitaP79621 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC13.11□□□□□ -0.31
CiitaP79621 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.11□□□□□ -0.31
CiitaP79621 Gm7207-201ENSMUST00000211575 1067 ntBASIC13.11□□□□□ -0.31
CiitaP79621 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CiitaP79621 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CiitaP79621 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CiitaP79621 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CiitaP79621 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 AC129931.1-201ENSMUST00000228865 1861 ntBASIC13.1□□□□□ -0.31
CiitaP79621 Gm8155-201ENSMUST00000216363 1612 ntBASIC13.1□□□□□ -0.31
CiitaP79621 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.1□□□□□ -0.31
CiitaP79621 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CiitaP79621 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CiitaP79621 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CiitaP79621 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CiitaP79621 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC13.1□□□□□ -0.31
CiitaP79621 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Gm14058-201ENSMUST00000116082 735 ntBASIC13.1□□□□□ -0.31
CiitaP79621 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CiitaP79621 Gm11660-201ENSMUST00000120955 412 ntBASIC13.1□□□□□ -0.31
CiitaP79621 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13.1□□□□□ -0.31
CiitaP79621 Gm23699-201ENSMUST00000158835 135 ntBASIC13.1□□□□□ -0.31
CiitaP79621 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CiitaP79621 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CiitaP79621 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC13.1□□□□□ -0.31
CiitaP79621 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CiitaP79621 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms