Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 AC154517.2-201ENSMUST00000220829 2458 ntBASIC14.41□□□□□ -0.1
Ercc3P49135 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Ercc3P49135 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ercc3P49135 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.4□□□□□ -0.1
Ercc3P49135 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC14.4□□□□□ -0.1
Ercc3P49135 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.4□□□□□ -0.1
Ercc3P49135 Rprl1-202ENSMUST00000198476 238 ntBASIC14.4□□□□□ -0.1
Ercc3P49135 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC14.4□□□□□ -0.1
Ercc3P49135 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Ercc3P49135 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ercc3P49135 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.4□□□□□ -0.1
Ercc3P49135 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Gm11989-201ENSMUST00000117240 672 ntBASIC14.39□□□□□ -0.11
Ercc3P49135 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Gm11362-201ENSMUST00000118838 850 ntBASIC14.39□□□□□ -0.11
Ercc3P49135 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Gm8913-201ENSMUST00000209491 641 ntBASIC14.39□□□□□ -0.11
Ercc3P49135 Gm45598-202ENSMUST00000210719 986 ntBASIC14.39□□□□□ -0.11
Ercc3P49135 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Ercc3P49135 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ercc3P49135 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Ercc3P49135 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.38□□□□□ -0.11
Ercc3P49135 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ercc3P49135 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC14.38□□□□□ -0.11
Ercc3P49135 Gm15236-201ENSMUST00000117309 379 ntBASIC14.38□□□□□ -0.11
Ercc3P49135 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms