Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
Rfx1P48377 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Rfx1P48377 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Rfx1P48377 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Gm11814-201ENSMUST00000119515 929 ntBASIC14.46□□□□□ -0.09
Rfx1P48377 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Gm28196-201ENSMUST00000187719 640 ntBASIC14.46□□□□□ -0.09
Rfx1P48377 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC14.46□□□□□ -0.09
Rfx1P48377 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Rfx1P48377 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Rfx1P48377 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rfx1P48377 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rfx1P48377 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rfx1P48377 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rfx1P48377 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Rfx1P48377 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Rfx1P48377 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC14.46□□□□□ -0.1
Rfx1P48377 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.46□□□□□ -0.1
Rfx1P48377 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Gm42706-201ENSMUST00000199733 1910 ntBASIC14.45□□□□□ -0.1
Rfx1P48377 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Rfx1P48377 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC14.45□□□□□ -0.1
Rfx1P48377 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC14.45□□□□□ -0.1
Rfx1P48377 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC14.45□□□□□ -0.1
Rfx1P48377 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC14.45□□□□□ -0.1
Rfx1P48377 Gm45059-201ENSMUST00000205558 1077 ntBASIC14.45□□□□□ -0.1
Rfx1P48377 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.45□□□□□ -0.1
Rfx1P48377 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC14.45□□□□□ -0.1
Rfx1P48377 AC125209.1-201ENSMUST00000225812 766 ntBASIC14.45□□□□□ -0.1
Rfx1P48377 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Rfx1P48377 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
Rfx1P48377 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC14.45□□□□□ -0.1
Rfx1P48377 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
Rfx1P48377 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Gm42498-201ENSMUST00000199981 1372 ntBASIC14.45□□□□□ -0.1
Rfx1P48377 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Rfx1P48377 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Rfx1P48377 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Rfx1P48377 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
Rfx1P48377 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 AC124397.2-201ENSMUST00000225575 2215 ntBASIC14.44□□□□□ -0.1
Rfx1P48377 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
Rfx1P48377 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
Rfx1P48377 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Rfx1P48377 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.44□□□□□ -0.1
Rfx1P48377 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms