Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Traf1P39428 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC14.08□□□□□ -0.16
Traf1P39428 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Traf1P39428 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC14.07□□□□□ -0.16
Traf1P39428 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Gm270-201ENSMUST00000223010 976 ntBASIC14.07□□□□□ -0.16
Traf1P39428 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Gm5455-201ENSMUST00000058710 715 ntBASIC14.07□□□□□ -0.16
Traf1P39428 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 AC126262.1-201ENSMUST00000221802 1904 ntBASIC14.07□□□□□ -0.16
Traf1P39428 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Traf1P39428 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Traf1P39428 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Traf1P39428 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Traf1P39428 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
Traf1P39428 Gm11511-201ENSMUST00000118146 540 ntBASIC14.06□□□□□ -0.16
Traf1P39428 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC14.06□□□□□ -0.16
Traf1P39428 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC14.06□□□□□ -0.16
Traf1P39428 Rprl1-201ENSMUST00000158050 327 ntBASIC14.06□□□□□ -0.16
Traf1P39428 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC14.06□□□□□ -0.16
Traf1P39428 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.06□□□□□ -0.16
Traf1P39428 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Gm7848-201ENSMUST00000210739 718 ntBASIC14.06□□□□□ -0.16
Traf1P39428 AC131330.1-201ENSMUST00000227814 1015 ntBASIC14.06□□□□□ -0.16
Traf1P39428 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
Traf1P39428 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC14.06□□□□□ -0.16
Traf1P39428 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Traf1P39428 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Traf1P39428 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Traf1P39428 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Gm13722-201ENSMUST00000117964 3066 ntBASIC14.05□□□□□ -0.16
Traf1P39428 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.05□□□□□ -0.16
Traf1P39428 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Traf1P39428 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Traf1P39428 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.05□□□□□ -0.16
Traf1P39428 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Traf1P39428 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC14.05□□□□□ -0.16
Traf1P39428 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.05□□□□□ -0.16
Traf1P39428 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC14.05□□□□□ -0.16
Traf1P39428 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Gm43184-201ENSMUST00000197247 542 ntBASIC14.05□□□□□ -0.16
Traf1P39428 Gm42997-202ENSMUST00000200321 985 ntBASIC14.05□□□□□ -0.16
Traf1P39428 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Traf1P39428 Gm44882-201ENSMUST00000205702 802 ntBASIC14.05□□□□□ -0.16
Traf1P39428 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC14.05□□□□□ -0.16
Traf1P39428 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC14.05□□□□□ -0.16
Traf1P39428 Olfr1347-205ENSMUST00000220413 964 ntBASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms