Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rnf180Q3U827 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm12129-201ENSMUST00000120104 1147 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm11736-201ENSMUST00000121468 505 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 AC124613.1-201ENSMUST00000198711 88 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 AC134913.2-201ENSMUST00000225017 771 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm37014-201ENSMUST00000194723 2253 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 AC158777.1-201ENSMUST00000226216 1724 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Gm9415-201ENSMUST00000200462 1321 ntBASIC14.09□□□□□ -0.15
Rnf180Q3U827 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rnf180Q3U827 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf180Q3U827 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC14.08□□□□□ -0.15
Rnf180Q3U827 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rnf180Q3U827 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Mir1190-201ENSMUST00000116925 96 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm16219-201ENSMUST00000120096 274 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Krtap6-3-202ENSMUST00000185581 520 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm43117-201ENSMUST00000198531 379 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 AC241616.1-201ENSMUST00000213741 166 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Krtap6-3-201ENSMUST00000079151 444 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 AC093022.4-203ENSMUST00000228523 2657 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Gm12912-201ENSMUST00000121596 1381 ntBASIC14.08□□□□□ -0.16
Rnf180Q3U827 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rnf180Q3U827 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm45199-201ENSMUST00000207640 1507 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm13426-201ENSMUST00000117887 795 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm13799-201ENSMUST00000138883 838 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm23582-201ENSMUST00000158530 139 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm29593-201ENSMUST00000189827 620 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Thy1-205ENSMUST00000215156 460 ntTSL 5 BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rnf180Q3U827 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.07□□□□□ -0.16
Rnf180Q3U827 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms