Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Cux1P53564 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC18.38■□□□□ 0.53
Cux1P53564 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC18.38■□□□□ 0.53
Cux1P53564 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Cux1P53564 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Gm10169-201ENSMUST00000121822 348 ntBASIC18.38■□□□□ 0.53
Cux1P53564 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC18.38■□□□□ 0.53
Cux1P53564 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Cux1P53564 E030018B13Rik-201ENSMUST00000177638 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC18.38■□□□□ 0.53
Cux1P53564 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC18.38■□□□□ 0.53
Cux1P53564 AC164618.2-201ENSMUST00000224770 573 ntBASIC18.38■□□□□ 0.53
Cux1P53564 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Cux1P53564 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Cux1P53564 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Cux1P53564 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC18.37■□□□□ 0.53
Cux1P53564 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Cux1P53564 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Cux1P53564 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Gm22877-201ENSMUST00000175451 105 ntBASIC18.37■□□□□ 0.53
Cux1P53564 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC18.37■□□□□ 0.53
Cux1P53564 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Cux1P53564 Gm42816-201ENSMUST00000198433 325 ntBASIC18.37■□□□□ 0.53
Cux1P53564 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC18.37■□□□□ 0.53
Cux1P53564 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC18.37■□□□□ 0.53
Cux1P53564 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Cux1P53564 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Cux1P53564 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
Cux1P53564 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Cux1P53564 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Gm14892-201ENSMUST00000117636 267 ntBASIC18.36■□□□□ 0.53
Cux1P53564 Gm12791-201ENSMUST00000120788 655 ntBASIC18.36■□□□□ 0.53
Cux1P53564 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC18.36■□□□□ 0.53
Cux1P53564 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Gm17192-201ENSMUST00000169031 511 ntBASIC18.36■□□□□ 0.53
Cux1P53564 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Gm43912-201ENSMUST00000204352 538 ntBASIC18.36■□□□□ 0.53
Cux1P53564 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 AC165154.1-201ENSMUST00000226661 340 ntBASIC18.36■□□□□ 0.53
Cux1P53564 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Gm18294-201ENSMUST00000176980 1748 ntBASIC18.36■□□□□ 0.53
Cux1P53564 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Cux1P53564 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Cux1P53564 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC18.35■□□□□ 0.53
Cux1P53564 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Cux1P53564 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Cux1P53564 Gm11980-201ENSMUST00000121445 986 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Gm25492-201ENSMUST00000157383 129 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC18.35■□□□□ 0.53
Cux1P53564 Gm37826-201ENSMUST00000195329 322 ntBASIC18.35■□□□□ 0.53
Cux1P53564 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms