Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC11.53□□□□□ -0.56
Cdx2P43241 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm42518-201ENSMUST00000196277 938 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm44270-201ENSMUST00000203084 1234 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Gm44882-201ENSMUST00000205702 802 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 AC166344.1-201ENSMUST00000223745 674 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC11.53□□□□□ -0.56
Cdx2P43241 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 AC154262.2-202ENSMUST00000225158 1331 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.56
Cdx2P43241 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
Cdx2P43241 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC11.52□□□□□ -0.56
Cdx2P43241 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cdx2P43241 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 AC126257.1-201ENSMUST00000213195 1536 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Gm11836-201ENSMUST00000121022 441 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm4879-201ENSMUST00000122190 1272 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC11.52□□□□□ -0.57
Cdx2P43241 Mir1956-201ENSMUST00000157748 65 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Gm4310-201ENSMUST00000177847 889 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm19166-201ENSMUST00000196041 1063 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm5714-201ENSMUST00000197343 566 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm3793-201ENSMUST00000204973 672 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.52□□□□□ -0.57
Cdx2P43241 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.52□□□□□ -0.57
Cdx2P43241 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Cdx2P43241 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Cdx2P43241 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Cdx2P43241 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 4930486L24Rik-201ENSMUST00000091569 1432 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cdx2P43241 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.51□□□□□ -0.57
Cdx2P43241 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Cdx2P43241 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Cdx2P43241 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC11.51□□□□□ -0.57
Cdx2P43241 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms