Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Gm22711-201ENSMUST00000116890 133 ntBASIC14.55□□□□□ -0.08
Ube4aE9Q735 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC14.55□□□□□ -0.08
Ube4aE9Q735 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Gm7537-201ENSMUST00000221660 1414 ntBASIC14.55□□□□□ -0.08
Ube4aE9Q735 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC14.55□□□□□ -0.08
Ube4aE9Q735 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC14.54□□□□□ -0.08
Ube4aE9Q735 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm23045-201ENSMUST00000175041 96 ntBASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm5852-201ENSMUST00000194119 1021 ntBASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm8365-201ENSMUST00000197334 648 ntBASIC14.54□□□□□ -0.08
Ube4aE9Q735 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 AC129219.2-201ENSMUST00000224324 701 ntBASIC14.54□□□□□ -0.08
Ube4aE9Q735 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Snora73b-201ENSMUST00000083419 205 ntBASIC14.54□□□□□ -0.08
Ube4aE9Q735 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ube4aE9Q735 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm9796-201ENSMUST00000062249 2250 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm13328-201ENSMUST00000120816 1020 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Mir8115-201ENSMUST00000184992 119 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm44270-201ENSMUST00000203084 1234 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 CT485607.1-201ENSMUST00000216100 85 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 Gm10752-201ENSMUST00000218348 729 ntBASIC14.53□□□□□ -0.08
Ube4aE9Q735 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ube4aE9Q735 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 76.6 ms