Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Trim3Q9R1R2 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm11964-201ENSMUST00000120982 444 ntBASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm38319-201ENSMUST00000194537 1266 ntBASIC11.48□□□□□ -0.57
Trim3Q9R1R2 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim3Q9R1R2 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm11222-201ENSMUST00000119005 738 ntBASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm13350-201ENSMUST00000120519 479 ntBASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm7584-201ENSMUST00000175829 940 ntBASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm45925-201ENSMUST00000218882 744 ntBASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm43868-201ENSMUST00000205187 2114 ntBASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Gm44260-201ENSMUST00000204946 2094 ntBASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.47□□□□□ -0.57
Trim3Q9R1R2 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Gm18227-201ENSMUST00000211082 1468 ntBASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trim3Q9R1R2 Gm24231-201ENSMUST00000104315 133 ntBASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms