Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Gm23363-201ENSMUST00000175024 79 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Gm18187-201ENSMUST00000196476 984 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Gm43692-201ENSMUST00000198236 1062 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Gm4768-201ENSMUST00000206199 686 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Trdn-202ENSMUST00000217779 1182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 AC154757.2-201ENSMUST00000228885 743 ntBASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Trim39Q9ESN2 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm29100-201ENSMUST00000187564 4410 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm17244-201ENSMUST00000192482 3416 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm10686-201ENSMUST00000215389 3247 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 AC131586.1-201ENSMUST00000228844 2964 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm43365-201ENSMUST00000196522 2106 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm13183-201ENSMUST00000118615 789 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm2639-201ENSMUST00000156881 1297 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 AC142191.1-201ENSMUST00000219217 699 ntTSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Poc5-201ENSMUST00000099295 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 AC157950.1-201ENSMUST00000217561 2168 ntBASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trim39Q9ESN2 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms