Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.01□□□□□ -0.49
Lima1Q9ERG0 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Gm6266-201ENSMUST00000203844 806 ntBASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Lima1Q9ERG0 Gm45011-201ENSMUST00000207620 2297 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm6992-201ENSMUST00000217973 1607 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Lima1Q9ERG0 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm12384-201ENSMUST00000119228 919 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm9299-201ENSMUST00000206392 1140 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm15897-201ENSMUST00000117770 1486 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm4780-202ENSMUST00000215200 2644 ntBASIC12□□□□□ -0.49
Lima1Q9ERG0 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Lima1Q9ERG0 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Lima1Q9ERG0 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
Lima1Q9ERG0 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms