Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Clp1Q99LI9 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Clp1Q99LI9 BC043934-202ENSMUST00000185694 2356 ntBASIC12.84□□□□□ -0.35
Clp1Q99LI9 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Clp1Q99LI9 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Clp1Q99LI9 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Clp1Q99LI9 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gm6771-201ENSMUST00000182716 1001 ntBASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gm3551-201ENSMUST00000190750 664 ntBASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gm42657-201ENSMUST00000201746 211 ntBASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC12.83□□□□□ -0.36
Clp1Q99LI9 AC166344.1-201ENSMUST00000223745 674 ntBASIC12.83□□□□□ -0.36
Clp1Q99LI9 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.83□□□□□ -0.36
Clp1Q99LI9 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Clp1Q99LI9 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Zkscan3-207ENSMUST00000223831 2101 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm24844-201ENSMUST00000158679 127 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm25951-201ENSMUST00000175330 64 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.82□□□□□ -0.36
Clp1Q99LI9 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Clp1Q99LI9 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.81□□□□□ -0.36
Clp1Q99LI9 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Clp1Q99LI9 Gm16166-201ENSMUST00000118291 787 ntBASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms