Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Usp40Q8BWR4 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Adra1a-206ENSMUST00000225182 2337 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Rnf17-202ENSMUST00000223627 2077 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gm15207-201ENSMUST00000119259 442 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gm17831-201ENSMUST00000205579 900 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 AC166344.1-201ENSMUST00000223745 674 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 CT030637.1-201ENSMUST00000228016 669 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gm44292-201ENSMUST00000205194 2364 ntBASIC16.62■□□□□ 0.25
Usp40Q8BWR4 Gm37844-201ENSMUST00000192473 4097 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm44414-201ENSMUST00000203660 2109 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm9279-201ENSMUST00000223175 1606 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm8731-201ENSMUST00000118088 412 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm9034-201ENSMUST00000182071 1005 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm19287-201ENSMUST00000203190 358 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm44124-201ENSMUST00000204159 472 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm9132-201ENSMUST00000210182 832 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm45398-201ENSMUST00000210561 165 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 AC154290.1-201ENSMUST00000223786 1240 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm5537-201ENSMUST00000091117 1252 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Usp40Q8BWR4 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm13916-201ENSMUST00000117368 628 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm14460-201ENSMUST00000121511 639 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm14665-201ENSMUST00000122294 557 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm9540-201ENSMUST00000188230 478 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm38117-201ENSMUST00000194653 939 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm18974-201ENSMUST00000221478 1031 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 AC171241.1-201ENSMUST00000228144 1166 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms