Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim56Q80VI1 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm28719-201ENSMUST00000187779 1757 ntBASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm28450-201ENSMUST00000187349 638 ntBASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm5363-201ENSMUST00000211927 938 ntBASIC14.33□□□□□ -0.12
Trim56Q80VI1 AC107638.1-201ENSMUST00000213690 1061 ntBASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm8155-201ENSMUST00000216363 1612 ntBASIC14.33□□□□□ -0.12
Trim56Q80VI1 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim56Q80VI1 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim56Q80VI1 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm26286-201ENSMUST00000104166 134 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm12217-201ENSMUST00000118858 696 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm6039-201ENSMUST00000121667 1250 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm27552-201ENSMUST00000183351 62 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm27844-201ENSMUST00000183613 62 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm17827-201ENSMUST00000211825 742 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm10152-201ENSMUST00000193475 1344 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gm18983-201ENSMUST00000222884 2729 ntBASIC14.32□□□□□ -0.12
Trim56Q80VI1 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim56Q80VI1 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gm9796-201ENSMUST00000062249 2250 ntBASIC14.31□□□□□ -0.12
Trim56Q80VI1 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gm11509-201ENSMUST00000117358 325 ntBASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gm7857-201ENSMUST00000117957 358 ntBASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gm16481-201ENSMUST00000119074 1227 ntBASIC14.31□□□□□ -0.12
Trim56Q80VI1 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gm43365-201ENSMUST00000196522 2106 ntBASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms