Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.27
Cln3Q61124 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.27
Cln3Q61124 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Gm22711-201ENSMUST00000116890 133 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Gm11836-201ENSMUST00000121022 441 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Mir1901-201ENSMUST00000122616 78 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC13.33□□□□□ -0.28
Cln3Q61124 Gm6485-201ENSMUST00000160676 439 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC13.33□□□□□ -0.28
Cln3Q61124 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
Cln3Q61124 Gm23045-201ENSMUST00000175041 96 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Gm23153-201ENSMUST00000175323 313 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Gm4654-201ENSMUST00000183305 982 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Gm28388-201ENSMUST00000186262 437 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Gm35638-201ENSMUST00000220724 652 ntBASIC13.33□□□□□ -0.28
Cln3Q61124 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC13.33□□□□□ -0.28
Cln3Q61124 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.33□□□□□ -0.28
Cln3Q61124 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Cln3Q61124 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.33□□□□□ -0.28
Cln3Q61124 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cln3Q61124 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Cln3Q61124 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Cln3Q61124 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Cln3Q61124 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm1848-201ENSMUST00000120711 789 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 Gm15904-201ENSMUST00000154515 487 ntTSL 3 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm8492-201ENSMUST00000182375 987 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 Gm7593-201ENSMUST00000187246 644 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 4930412E21Rik-201ENSMUST00000194267 778 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm37720-201ENSMUST00000195497 1241 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC13.32□□□□□ -0.28
Cln3Q61124 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm6430-201ENSMUST00000054664 1248 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.32□□□□□ -0.28
Cln3Q61124 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cln3Q61124 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.32□□□□□ -0.28
Cln3Q61124 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 Gm11451-201ENSMUST00000118946 630 ntBASIC13.31□□□□□ -0.28
Cln3Q61124 Gm8737-201ENSMUST00000122208 642 ntBASIC13.31□□□□□ -0.28
Cln3Q61124 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC13.31□□□□□ -0.28
Cln3Q61124 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cln3Q61124 9030204H09Rik-201ENSMUST00000139455 653 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms