Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC12.6□□□□□ -0.39
Sox9Q04887 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
Sox9Q04887 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Sox9Q04887 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Sox9Q04887 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Sox9Q04887 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Gm24791-201ENSMUST00000104284 131 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Gm8731-201ENSMUST00000118088 412 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Gm7722-201ENSMUST00000120646 741 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC12.59□□□□□ -0.39
Sox9Q04887 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC12.59□□□□□ -0.39
Sox9Q04887 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Sox9Q04887 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Gm37458-201ENSMUST00000194055 410 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 AC165154.1-201ENSMUST00000226661 340 ntBASIC12.59□□□□□ -0.39
Sox9Q04887 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Sox9Q04887 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Sox9Q04887 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Sox9Q04887 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Sox9Q04887 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Sox9Q04887 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Myh3-203ENSMUST00000165221 5994 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Sox9Q04887 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC12.59□□□□□ -0.39
Sox9Q04887 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.59□□□□□ -0.39
Sox9Q04887 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Sox9Q04887 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Sox9Q04887 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Sox9Q04887 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Sox9Q04887 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.58□□□□□ -0.39
Sox9Q04887 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm8815-201ENSMUST00000173809 620 ntBASIC12.58□□□□□ -0.4
Sox9Q04887 Gm9135-201ENSMUST00000182963 990 ntBASIC12.58□□□□□ -0.4
Sox9Q04887 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Sox9Q04887 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm18198-201ENSMUST00000204986 1551 ntBASIC12.58□□□□□ -0.4
Sox9Q04887 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm44953-201ENSMUST00000208745 1286 ntBASIC12.58□□□□□ -0.4
Sox9Q04887 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
Sox9Q04887 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Sox9Q04887 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Sox9Q04887 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sox9Q04887 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Sox9Q04887 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.57□□□□□ -0.4
Sox9Q04887 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sox9Q04887 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sox9Q04887 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sox9Q04887 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms