Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm6189-201ENSMUST00000164487 2082 ntBASIC14.09□□□□□ -0.15
Col1a1P11087 Gm15615-201ENSMUST00000118876 198 ntBASIC14.09□□□□□ -0.15
Col1a1P11087 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC14.09□□□□□ -0.15
Col1a1P11087 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC14.09□□□□□ -0.15
Col1a1P11087 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC14.09□□□□□ -0.15
Col1a1P11087 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC14.09□□□□□ -0.15
Col1a1P11087 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Gm8574-201ENSMUST00000203207 924 ntBASIC14.09□□□□□ -0.15
Col1a1P11087 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Gm7959-201ENSMUST00000221823 1078 ntBASIC14.09□□□□□ -0.15
Col1a1P11087 Lgi3-203ENSMUST00000226548 1001 ntBASIC14.09□□□□□ -0.15
Col1a1P11087 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col1a1P11087 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Col1a1P11087 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Col1a1P11087 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col1a1P11087 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 Gm17213-201ENSMUST00000165161 1360 ntBASIC14.08□□□□□ -0.15
Col1a1P11087 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col1a1P11087 Ssr1-203ENSMUST00000225246 1825 ntBASIC14.08□□□□□ -0.15
Col1a1P11087 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC14.08□□□□□ -0.16
Col1a1P11087 Gm14807-201ENSMUST00000116640 983 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm11244-201ENSMUST00000121243 237 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Col1a1P11087 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC14.08□□□□□ -0.16
Col1a1P11087 Gm28937-201ENSMUST00000185413 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm29400-201ENSMUST00000187208 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm28662-201ENSMUST00000188446 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm28251-201ENSMUST00000188835 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Col1a1P11087 Gm37318-201ENSMUST00000194325 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm38017-201ENSMUST00000194768 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm37287-201ENSMUST00000195449 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm37793-201ENSMUST00000195548 695 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC14.08□□□□□ -0.16
Col1a1P11087 AC154572.1-201ENSMUST00000226098 1204 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Gm4604-201ENSMUST00000025040 390 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Hils1-201ENSMUST00000038928 864 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Col1a1P11087 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Col1a1P11087 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.08□□□□□ -0.16
Col1a1P11087 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC14.08□□□□□ -0.16
Col1a1P11087 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Col1a1P11087 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC14.08□□□□□ -0.16
Col1a1P11087 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Gm6655-201ENSMUST00000201932 1309 ntBASIC14.07□□□□□ -0.16
Col1a1P11087 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Gm7541-201ENSMUST00000118361 535 ntBASIC14.07□□□□□ -0.16
Col1a1P11087 Gm12783-201ENSMUST00000121425 397 ntBASIC14.07□□□□□ -0.16
Col1a1P11087 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC14.07□□□□□ -0.16
Col1a1P11087 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC14.07□□□□□ -0.16
Col1a1P11087 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC14.07□□□□□ -0.16
Col1a1P11087 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col1a1P11087 CT009546.1-201ENSMUST00000222573 1120 ntBASIC14.07□□□□□ -0.16
Col1a1P11087 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col1a1P11087 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Col1a1P11087 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Col1a1P11087 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.07□□□□□ -0.16
Col1a1P11087 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col1a1P11087 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col1a1P11087 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Col1a1P11087 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms