Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm4735-201ENSMUST00000138679 1302 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 Gm5855-201ENSMUST00000200240 1305 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 AC159621.2-201ENSMUST00000223519 1326 ntBASIC10.06□□□□□ -0.8
Hmgb3O54879 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Rims1-203ENSMUST00000097809 6179 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Hspa12a-201ENSMUST00000066285 5733 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Hmgb3O54879 Ctnnd1-223ENSMUST00000111697 5294 ntTSL 5 BASIC10.06□□□□□ -0.8
Hmgb3O54879 Cacna1c-208ENSMUST00000187317 6663 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ddx11-205ENSMUST00000224497 4141 ntAPPRIS ALT2 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Furin-201ENSMUST00000107362 4166 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gm18227-201ENSMUST00000211082 1468 ntBASIC10.05□□□□□ -0.8
Hmgb3O54879 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Lrba-201ENSMUST00000107635 9888 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Slco5a1-207ENSMUST00000188454 8463 ntAPPRIS P2 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Zbtb24-205ENSMUST00000216656 2476 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Onecut2-201ENSMUST00000115145 13389 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Onecut2-202ENSMUST00000175965 13391 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gm26308-201ENSMUST00000157768 69 ntBASIC10.05□□□□□ -0.8
Hmgb3O54879 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Itm2b-204ENSMUST00000228637 783 ntBASIC10.05□□□□□ -0.8
Hmgb3O54879 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Ctnnd1-202ENSMUST00000066177 5044 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Lig3-211ENSMUST00000173722 5797 ntAPPRIS P3 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Smchd1-201ENSMUST00000127430 7052 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Hmgb3O54879 Inhbe-201ENSMUST00000059718 5319 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Hmgb3O54879 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Hivep2-205ENSMUST00000191138 9846 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Adar-203ENSMUST00000107405 5871 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Hmgb3O54879 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Hmgb3O54879 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC10.04□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 342.2 ms