Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm29590-201ENSMUST00000190396 1304 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm13875-201ENSMUST00000120162 282 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm14999-201ENSMUST00000121039 624 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm26956-201ENSMUST00000182176 986 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm9022-201ENSMUST00000182482 992 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm27243-201ENSMUST00000183964 521 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm18304-201ENSMUST00000189162 546 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gm17383-201ENSMUST00000078739 1041 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Prpf40aQ9R1C7 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 4933403O08Rik-201ENSMUST00000132037 999 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gm45331-201ENSMUST00000209868 554 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gm21769-201ENSMUST00000211922 111 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 AC159896.2-201ENSMUST00000214753 269 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 AC154319.1-201ENSMUST00000216330 312 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 AC155266.1-201ENSMUST00000220762 904 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 AL589735.1-201ENSMUST00000224353 270 ntBASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Prpf40aQ9R1C7 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.43□□□□□ -0.26
Prpf40aQ9R1C7 Gm13183-201ENSMUST00000118615 789 ntBASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms