Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Col11a1Q61245 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.37□□□□□ -0.27
Col11a1Q61245 Gm44152-201ENSMUST00000205007 1691 ntBASIC13.37□□□□□ -0.27
Col11a1Q61245 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC13.37□□□□□ -0.27
Col11a1Q61245 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC13.37□□□□□ -0.27
Col11a1Q61245 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Col11a1Q61245 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Col11a1Q61245 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm44216-201ENSMUST00000203942 157 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm6423-201ENSMUST00000204315 934 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm2448-201ENSMUST00000207080 559 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm45085-201ENSMUST00000209100 441 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Mir326-201ENSMUST00000083637 95 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Bcat2-208ENSMUST00000211173 1684 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm14993-201ENSMUST00000121180 164 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm15549-201ENSMUST00000121595 622 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm23694-201ENSMUST00000179335 110 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm4895-201ENSMUST00000181646 1137 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm9162-201ENSMUST00000182081 991 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 AI839979-201ENSMUST00000200738 654 ntTSL 2 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Gm18035-201ENSMUST00000211962 589 ntBASIC13.36□□□□□ -0.27
Col11a1Q61245 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Col11a1Q61245 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Col11a1Q61245 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Samd13-202ENSMUST00000125965 1590 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Gm14441-201ENSMUST00000121960 540 ntBASIC13.35□□□□□ -0.27
Col11a1Q61245 Gm37782-201ENSMUST00000194879 678 ntBASIC13.35□□□□□ -0.27
Col11a1Q61245 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Olfr1163-201ENSMUST00000099835 1043 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Gm8146-201ENSMUST00000192106 1847 ntBASIC13.35□□□□□ -0.27
Col11a1Q61245 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col11a1Q61245 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col11a1Q61245 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC13.35□□□□□ -0.27
Col11a1Q61245 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms