Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm6450-201ENSMUST00000200896 574 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 AC140375.1-201ENSMUST00000225421 694 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Col1a1P11087 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Col1a1P11087 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Gm10169-201ENSMUST00000121822 348 ntBASIC14.11□□□□□ -0.15
Col1a1P11087 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC14.11□□□□□ -0.15
Col1a1P11087 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Col1a1P11087 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC14.11□□□□□ -0.15
Col1a1P11087 Gm18463-201ENSMUST00000207258 474 ntBASIC14.11□□□□□ -0.15
Col1a1P11087 Gm18460-201ENSMUST00000208088 464 ntBASIC14.11□□□□□ -0.15
Col1a1P11087 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Gm45410-201ENSMUST00000211331 1093 ntBASIC14.11□□□□□ -0.15
Col1a1P11087 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC14.11□□□□□ -0.15
Col1a1P11087 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 AC129308.3-201ENSMUST00000225652 524 ntBASIC14.11□□□□□ -0.15
Col1a1P11087 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col1a1P11087 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
Col1a1P11087 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Gm43447-201ENSMUST00000198471 1535 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 AC160405.1-201ENSMUST00000218207 1545 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
Col1a1P11087 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col1a1P11087 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC14.1□□□□□ -0.15
Col1a1P11087 Gm8459-201ENSMUST00000162504 760 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Gm10807-201ENSMUST00000177134 795 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Gm9630-201ENSMUST00000178304 885 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Gm9135-201ENSMUST00000182963 990 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC14.1□□□□□ -0.15
Col1a1P11087 Gm7902-201ENSMUST00000198842 947 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col1a1P11087 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 CT030653.1-201ENSMUST00000224382 1279 ntBASIC14.1□□□□□ -0.15
Col1a1P11087 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col1a1P11087 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col1a1P11087 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Col1a1P11087 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC14.09□□□□□ -0.15
Col1a1P11087 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col1a1P11087 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms