Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Col8a1Q00780 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm37861-201ENSMUST00000193534 2869 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC10.46□□□□□ -0.73
Col8a1Q00780 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm11246-201ENSMUST00000120880 345 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm12291-201ENSMUST00000121627 311 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm13182-201ENSMUST00000122241 312 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm20392-201ENSMUST00000173047 701 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm27910-201ENSMUST00000185004 107 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Col8a1Q00780 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC10.46□□□□□ -0.73
Col8a1Q00780 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC10.46□□□□□ -0.73
Col8a1Q00780 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Gm270-201ENSMUST00000223010 976 ntBASIC10.46□□□□□ -0.73
Col8a1Q00780 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Col8a1Q00780 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC10.46□□□□□ -0.74
Col8a1Q00780 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Col8a1Q00780 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.74
Col8a1Q00780 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Col8a1Q00780 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC10.46□□□□□ -0.74
Col8a1Q00780 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Col8a1Q00780 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
Col8a1Q00780 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Col8a1Q00780 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Col8a1Q00780 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Gm13600-201ENSMUST00000117949 744 ntBASIC10.45□□□□□ -0.74
Col8a1Q00780 Gm11956-201ENSMUST00000119525 512 ntBASIC10.45□□□□□ -0.74
Col8a1Q00780 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC10.45□□□□□ -0.74
Col8a1Q00780 Mir7076-201ENSMUST00000183519 74 ntBASIC10.45□□□□□ -0.74
Col8a1Q00780 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Gm19091-201ENSMUST00000208120 978 ntBASIC10.45□□□□□ -0.74
Col8a1Q00780 AC166341.2-201ENSMUST00000220571 120 ntBASIC10.45□□□□□ -0.74
Col8a1Q00780 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC10.45□□□□□ -0.74
Col8a1Q00780 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC10.45□□□□□ -0.74
Col8a1Q00780 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
Col8a1Q00780 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Col8a1Q00780 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm43061-201ENSMUST00000198850 2241 ntBASIC10.44□□□□□ -0.74
Col8a1Q00780 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Col8a1Q00780 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC10.44□□□□□ -0.74
Col8a1Q00780 Gm24891-201ENSMUST00000104391 136 ntBASIC10.44□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms