Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Cd40lgP27548 Madd-206ENSMUST00000099725 5905 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.33□□□□□ -0.6
Cd40lgP27548 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm27320-201ENSMUST00000184892 109 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm37201-201ENSMUST00000191845 523 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm6334-201ENSMUST00000207083 228 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm7172-201ENSMUST00000218047 1152 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm10176-201ENSMUST00000159707 2264 ntBASIC11.33□□□□□ -0.6
Cd40lgP27548 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cd40lgP27548 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cd40lgP27548 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm44851-201ENSMUST00000205735 2309 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Rmrp-201ENSMUST00000157463 271 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm2546-201ENSMUST00000182630 991 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Mir6420-201ENSMUST00000185032 102 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm38158-201ENSMUST00000194617 339 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm8227-201ENSMUST00000223306 571 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.32□□□□□ -0.6
Cd40lgP27548 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cd40lgP27548 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Cd40lgP27548 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms