Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col1a1P11087 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.14□□□□□ -0.15
Col1a1P11087 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
Col1a1P11087 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
Col1a1P11087 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col1a1P11087 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col1a1P11087 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Col1a1P11087 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC14.13□□□□□ -0.15
Col1a1P11087 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC14.13□□□□□ -0.15
Col1a1P11087 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Gm9089-201ENSMUST00000122027 526 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col1a1P11087 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC14.13□□□□□ -0.15
Col1a1P11087 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC14.13□□□□□ -0.15
Col1a1P11087 Gm7940-201ENSMUST00000218195 769 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 AC126799.1-201ENSMUST00000221976 246 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 AC102368.1-201ENSMUST00000227161 892 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Gm37513-201ENSMUST00000194830 2268 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Gm38378-201ENSMUST00000195153 2268 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col1a1P11087 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC14.13□□□□□ -0.15
Col1a1P11087 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col1a1P11087 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col1a1P11087 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm14892-201ENSMUST00000117636 267 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC14.12□□□□□ -0.15
Col1a1P11087 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC14.12□□□□□ -0.15
Col1a1P11087 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm3726-201ENSMUST00000203110 785 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 Gm35713-201ENSMUST00000210516 199 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC14.12□□□□□ -0.15
Col1a1P11087 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Col1a1P11087 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
Col1a1P11087 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
Col1a1P11087 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col1a1P11087 Gm13549-201ENSMUST00000118339 796 ntBASIC14.12□□□□□ -0.15
Col1a1P11087 Gm38389-201ENSMUST00000147871 653 ntTSL 3 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms