Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rif1Q6PR54 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rif1Q6PR54 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Rif1Q6PR54 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Rif1Q6PR54 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
Rif1Q6PR54 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Rif1Q6PR54 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
Rif1Q6PR54 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rif1Q6PR54 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.78■□□□□ 0.44
Rif1Q6PR54 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rif1Q6PR54 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rif1Q6PR54 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Rif1Q6PR54 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rif1Q6PR54 Nsd1-206ENSMUST00000224918 1001 ntBASIC17.78■□□□□ 0.44
Rif1Q6PR54 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.78■□□□□ 0.44
Rif1Q6PR54 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rif1Q6PR54 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.77■□□□□ 0.44
Rif1Q6PR54 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rif1Q6PR54 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.77■□□□□ 0.43
Rif1Q6PR54 Gm9870-201ENSMUST00000063874 645 ntBASIC17.77■□□□□ 0.43
Rif1Q6PR54 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rif1Q6PR54 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rif1Q6PR54 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rif1Q6PR54 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
Rif1Q6PR54 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rif1Q6PR54 Smad6-203ENSMUST00000179458 273 ntBASIC17.75■□□□□ 0.43
Rif1Q6PR54 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Rif1Q6PR54 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rif1Q6PR54 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rif1Q6PR54 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rif1Q6PR54 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Rif1Q6PR54 Gm10620-201ENSMUST00000098379 1332 ntBASIC17.74■□□□□ 0.43
Rif1Q6PR54 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.74■□□□□ 0.43
Rif1Q6PR54 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rif1Q6PR54 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rif1Q6PR54 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Rif1Q6PR54 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rif1Q6PR54 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rif1Q6PR54 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rif1Q6PR54 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rif1Q6PR54 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.72■□□□□ 0.43
Rif1Q6PR54 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC17.71■□□□□ 0.43
Rif1Q6PR54 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 AC153524.1-201ENSMUST00000220436 1935 ntBASIC17.71■□□□□ 0.43
Rif1Q6PR54 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.71■□□□□ 0.43
Rif1Q6PR54 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rif1Q6PR54 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rif1Q6PR54 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Rif1Q6PR54 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.69■□□□□ 0.42
Rif1Q6PR54 Gm10819-201ENSMUST00000099988 561 ntBASIC17.69■□□□□ 0.42
Rif1Q6PR54 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rif1Q6PR54 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rif1Q6PR54 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rif1Q6PR54 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rif1Q6PR54 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Rif1Q6PR54 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rif1Q6PR54 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.67■□□□□ 0.42
Rif1Q6PR54 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms