Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC19.27■□□□□ 0.68
ShhQ62226 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.27■□□□□ 0.68
ShhQ62226 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ShhQ62226 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ShhQ62226 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
ShhQ62226 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
ShhQ62226 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
ShhQ62226 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.27■□□□□ 0.67
ShhQ62226 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.26■□□□□ 0.67
ShhQ62226 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
ShhQ62226 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.26■□□□□ 0.67
ShhQ62226 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
ShhQ62226 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
ShhQ62226 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ShhQ62226 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.25■□□□□ 0.67
ShhQ62226 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.25■□□□□ 0.67
ShhQ62226 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.25■□□□□ 0.67
ShhQ62226 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.25■□□□□ 0.67
ShhQ62226 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
ShhQ62226 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ShhQ62226 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
ShhQ62226 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ShhQ62226 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ShhQ62226 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ShhQ62226 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ShhQ62226 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ShhQ62226 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
ShhQ62226 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.23■□□□□ 0.67
ShhQ62226 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.23■□□□□ 0.67
ShhQ62226 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ShhQ62226 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ShhQ62226 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.22■□□□□ 0.67
ShhQ62226 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ShhQ62226 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ShhQ62226 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
ShhQ62226 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ShhQ62226 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.22■□□□□ 0.67
ShhQ62226 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ShhQ62226 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ShhQ62226 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ShhQ62226 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.21■□□□□ 0.67
ShhQ62226 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
ShhQ62226 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ShhQ62226 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ShhQ62226 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.2■□□□□ 0.66
ShhQ62226 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
ShhQ62226 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
ShhQ62226 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ShhQ62226 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.18■□□□□ 0.66
ShhQ62226 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC19.18■□□□□ 0.66
ShhQ62226 Gm18284-201ENSMUST00000172604 624 ntBASIC19.18■□□□□ 0.66
ShhQ62226 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ShhQ62226 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ShhQ62226 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ShhQ62226 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.18■□□□□ 0.66
ShhQ62226 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
ShhQ62226 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.17■□□□□ 0.66
ShhQ62226 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ShhQ62226 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ShhQ62226 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ShhQ62226 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.17■□□□□ 0.66
ShhQ62226 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ShhQ62226 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ShhQ62226 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ShhQ62226 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ShhQ62226 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
ShhQ62226 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms