Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC15.1■□□□□ 0.01
Foxc1Q61572 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Foxc1Q61572 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Foxc1Q61572 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Foxc1Q61572 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Foxc1Q61572 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC15.09■□□□□ 0.01
Foxc1Q61572 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC15.09■□□□□ 0.01
Foxc1Q61572 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Foxc1Q61572 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Foxc1Q61572 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Foxc1Q61572 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Foxc1Q61572 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Foxc1Q61572 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Foxc1Q61572 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Foxc1Q61572 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Foxc1Q61572 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC15.08■□□□□ 0
Foxc1Q61572 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC15.08■□□□□ 0
Foxc1Q61572 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Foxc1Q61572 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Foxc1Q61572 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Foxc1Q61572 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC15.08■□□□□ 0
Foxc1Q61572 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Foxc1Q61572 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 Dmtn-209ENSMUST00000228295 2572 ntBASIC15.07■□□□□ 0
Foxc1Q61572 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Foxc1Q61572 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC15.07■□□□□ 0
Foxc1Q61572 AC116713.1-201ENSMUST00000215074 430 ntBASIC15.07■□□□□ 0
Foxc1Q61572 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC15.07■□□□□ 0
Foxc1Q61572 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC15.07■□□□□ 0
Foxc1Q61572 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 H3f3aos-201ENSMUST00000097448 2905 ntBASIC15.07■□□□□ 0
Foxc1Q61572 Gm8093-201ENSMUST00000128935 1892 ntBASIC15.07■□□□□ 0
Foxc1Q61572 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Foxc1Q61572 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
Foxc1Q61572 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC15.06■□□□□ 0
Foxc1Q61572 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC15.06■□□□□ 0
Foxc1Q61572 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Foxc1Q61572 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Foxc1Q61572 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Foxc1Q61572 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Foxc1Q61572 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Foxc1Q61572 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Foxc1Q61572 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC15.04■□□□□ -0
Foxc1Q61572 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC15.04■□□□□ -0
Foxc1Q61572 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Foxc1Q61572 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC15.04■□□□□ -0
Foxc1Q61572 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC15.04■□□□□ -0
Foxc1Q61572 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Foxc1Q61572 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC15.04■□□□□ -0
Foxc1Q61572 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC15.03■□□□□ -0
Foxc1Q61572 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 Gm10399-202ENSMUST00000202768 748 ntBASIC15.03■□□□□ -0
Foxc1Q61572 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC15.03■□□□□ -0
Foxc1Q61572 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Foxc1Q61572 AC115037.1-201ENSMUST00000223391 2173 ntBASIC15.02■□□□□ -0
Foxc1Q61572 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Foxc1Q61572 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Foxc1Q61572 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Foxc1Q61572 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Foxc1Q61572 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Foxc1Q61572 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Foxc1Q61572 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms