Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav5d-4Q5R1F6 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Trav5d-4Q5R1F6 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Gm5921-201ENSMUST00000075898 882 ntBASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav5d-4Q5R1F6 AC116713.1-201ENSMUST00000215074 430 ntBASIC17.85■□□□□ 0.45
Trav5d-4Q5R1F6 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC17.85■□□□□ 0.45
Trav5d-4Q5R1F6 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Trav5d-4Q5R1F6 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav5d-4Q5R1F6 Kdm3b-204ENSMUST00000224715 2032 ntBASIC17.84■□□□□ 0.45
Trav5d-4Q5R1F6 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trav5d-4Q5R1F6 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav5d-4Q5R1F6 Gm13238-201ENSMUST00000117655 780 ntBASIC17.84■□□□□ 0.45
Trav5d-4Q5R1F6 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav5d-4Q5R1F6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trav5d-4Q5R1F6 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav5d-4Q5R1F6 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav5d-4Q5R1F6 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav5d-4Q5R1F6 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
Trav5d-4Q5R1F6 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trav5d-4Q5R1F6 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav5d-4Q5R1F6 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav5d-4Q5R1F6 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav5d-4Q5R1F6 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.8■□□□□ 0.44
Trav5d-4Q5R1F6 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav5d-4Q5R1F6 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav5d-4Q5R1F6 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav5d-4Q5R1F6 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Gm43566-201ENSMUST00000196851 808 ntBASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav5d-4Q5R1F6 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav5d-4Q5R1F6 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav5d-4Q5R1F6 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trav5d-4Q5R1F6 Gm44949-201ENSMUST00000206423 1450 ntBASIC17.76■□□□□ 0.43
Trav5d-4Q5R1F6 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav5d-4Q5R1F6 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav5d-4Q5R1F6 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav5d-4Q5R1F6 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav5d-4Q5R1F6 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms