Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Gm18671-201ENSMUST00000214826 683 ntBASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Gm7143-201ENSMUST00000222811 859 ntBASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.71■□□□□ 0.91
Col27a1Q5QNQ9 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col27a1Q5QNQ9 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col27a1Q5QNQ9 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col27a1Q5QNQ9 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col27a1Q5QNQ9 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 AV356131-201ENSMUST00000206201 750 ntBASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col27a1Q5QNQ9 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
Col27a1Q5QNQ9 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col27a1Q5QNQ9 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col27a1Q5QNQ9 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.66■□□□□ 0.9
Col27a1Q5QNQ9 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Col27a1Q5QNQ9 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col27a1Q5QNQ9 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.66■□□□□ 0.9
Col27a1Q5QNQ9 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col27a1Q5QNQ9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col27a1Q5QNQ9 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col27a1Q5QNQ9 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Col27a1Q5QNQ9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Col27a1Q5QNQ9 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Col27a1Q5QNQ9 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Gm43530-201ENSMUST00000195920 274 ntBASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col27a1Q5QNQ9 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Smad6-203ENSMUST00000179458 273 ntBASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Col27a1Q5QNQ9 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
Col27a1Q5QNQ9 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.61■□□□□ 0.89
Col27a1Q5QNQ9 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col27a1Q5QNQ9 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col27a1Q5QNQ9 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col27a1Q5QNQ9 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.6■□□□□ 0.89
Col27a1Q5QNQ9 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 50.1 ms