Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ddb1Q3U1J4 Gm37179-201ENSMUST00000194862 823 ntBASIC26.97■■□□□ 1.91
Ddb1Q3U1J4 Gm6085-201ENSMUST00000182774 1470 ntBASIC26.97■■□□□ 1.91
Ddb1Q3U1J4 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddb1Q3U1J4 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddb1Q3U1J4 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddb1Q3U1J4 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
Ddb1Q3U1J4 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
Ddb1Q3U1J4 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 AC099934.2-201ENSMUST00000196389 70 ntBASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 AC156953.1-201ENSMUST00000196953 70 ntBASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 AC157822.2-201ENSMUST00000200291 70 ntBASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ddb1Q3U1J4 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC26.94■■□□□ 1.9
Ddb1Q3U1J4 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddb1Q3U1J4 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Ddb1Q3U1J4 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddb1Q3U1J4 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Ddb1Q3U1J4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
Ddb1Q3U1J4 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ddb1Q3U1J4 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Ddb1Q3U1J4 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Ddb1Q3U1J4 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Ddb1Q3U1J4 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
Ddb1Q3U1J4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.93■■□□□ 1.9
Ddb1Q3U1J4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Gm27011-201ENSMUST00000182352 972 ntBASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Spcs1-204ENSMUST00000226782 949 ntBASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC26.92■■□□□ 1.9
Ddb1Q3U1J4 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ddb1Q3U1J4 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Ddb1Q3U1J4 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ddb1Q3U1J4 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC26.91■■□□□ 1.9
Ddb1Q3U1J4 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddb1Q3U1J4 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddb1Q3U1J4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddb1Q3U1J4 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ddb1Q3U1J4 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
Ddb1Q3U1J4 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 CT025689.6-201ENSMUST00000224991 1104 ntBASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Ddb1Q3U1J4 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Ddb1Q3U1J4 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC26.86■■□□□ 1.89
Ddb1Q3U1J4 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Ddb1Q3U1J4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC26.86■■□□□ 1.89
Ddb1Q3U1J4 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC26.86■■□□□ 1.89
Ddb1Q3U1J4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddb1Q3U1J4 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ddb1Q3U1J4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Gm10129-202ENSMUST00000193100 1316 ntBASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ddb1Q3U1J4 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
Ddb1Q3U1J4 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ddb1Q3U1J4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Ddb1Q3U1J4 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ddb1Q3U1J4 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Ddb1Q3U1J4 Gm40848-201ENSMUST00000221998 324 ntBASIC26.83■■□□□ 1.89
Ddb1Q3U1J4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ddb1Q3U1J4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC26.82■■□□□ 1.88
Ddb1Q3U1J4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC26.82■■□□□ 1.88
Ddb1Q3U1J4 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ddb1Q3U1J4 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ddb1Q3U1J4 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Ddb1Q3U1J4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
Ddb1Q3U1J4 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC26.8■■□□□ 1.88
Ddb1Q3U1J4 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Ddb1Q3U1J4 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC26.79■■□□□ 1.88
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms