Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Shmt1P50431 Dmtn-209ENSMUST00000228295 2572 ntBASIC22.08■■□□□ 1.13
Shmt1P50431 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Shmt1P50431 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
Shmt1P50431 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Shmt1P50431 Gm4430-201ENSMUST00000192413 1943 ntBASIC22.08■■□□□ 1.12
Shmt1P50431 Gm32051-202ENSMUST00000197905 2385 ntBASIC22.07■■□□□ 1.12
Shmt1P50431 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC22.07■■□□□ 1.12
Shmt1P50431 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Shmt1P50431 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Shmt1P50431 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Shmt1P50431 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Shmt1P50431 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
Shmt1P50431 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Shmt1P50431 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC22.06■■□□□ 1.12
Shmt1P50431 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Shmt1P50431 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Shmt1P50431 Gm43403-201ENSMUST00000198011 1786 ntBASIC22.06■■□□□ 1.12
Shmt1P50431 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Shmt1P50431 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Shmt1P50431 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC22.05■■□□□ 1.12
Shmt1P50431 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Shmt1P50431 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Shmt1P50431 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Shmt1P50431 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Shmt1P50431 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC22.04■■□□□ 1.12
Shmt1P50431 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Shmt1P50431 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC22.04■■□□□ 1.12
Shmt1P50431 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
Shmt1P50431 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Shmt1P50431 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Shmt1P50431 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Shmt1P50431 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC22.03■■□□□ 1.12
Shmt1P50431 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Shmt1P50431 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC22.03■■□□□ 1.12
Shmt1P50431 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC22.03■■□□□ 1.12
Shmt1P50431 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Shmt1P50431 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC22.02■■□□□ 1.12
Shmt1P50431 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Shmt1P50431 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Shmt1P50431 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Shmt1P50431 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Shmt1P50431 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Shmt1P50431 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
Shmt1P50431 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Shmt1P50431 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC22.01■■□□□ 1.11
Shmt1P50431 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC22.01■■□□□ 1.11
Shmt1P50431 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Shmt1P50431 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC22■■□□□ 1.11
Shmt1P50431 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Shmt1P50431 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC22■■□□□ 1.11
Shmt1P50431 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC22■■□□□ 1.11
Shmt1P50431 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
Shmt1P50431 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Shmt1P50431 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC22■■□□□ 1.11
Shmt1P50431 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
Shmt1P50431 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Shmt1P50431 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Shmt1P50431 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC21.99■■□□□ 1.11
Shmt1P50431 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.99■■□□□ 1.11
Shmt1P50431 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Shmt1P50431 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Shmt1P50431 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Shmt1P50431 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Shmt1P50431 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Shmt1P50431 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Shmt1P50431 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Shmt1P50431 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Shmt1P50431 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Shmt1P50431 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Shmt1P50431 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Shmt1P50431 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Shmt1P50431 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Shmt1P50431 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Shmt1P50431 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Shmt1P50431 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Shmt1P50431 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Shmt1P50431 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Shmt1P50431 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Shmt1P50431 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Shmt1P50431 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Shmt1P50431 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Shmt1P50431 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Shmt1P50431 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Shmt1P50431 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC21.94■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms