Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Cdx2P43241 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdx2P43241 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
Cdx2P43241 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Cdx2P43241 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.94■□□□□ 0.78
Cdx2P43241 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
Cdx2P43241 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdx2P43241 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdx2P43241 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Cdx2P43241 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdx2P43241 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx2P43241 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx2P43241 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx2P43241 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx2P43241 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
Cdx2P43241 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 Gm5874-201ENSMUST00000096101 508 ntBASIC19.92■□□□□ 0.78
Cdx2P43241 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx2P43241 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx2P43241 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx2P43241 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx2P43241 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx2P43241 Gm43759-201ENSMUST00000196925 1261 ntBASIC19.91■□□□□ 0.78
Cdx2P43241 Gm43173-201ENSMUST00000202246 593 ntBASIC19.91■□□□□ 0.78
Cdx2P43241 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx2P43241 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Cdx2P43241 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx2P43241 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC19.9■□□□□ 0.78
Cdx2P43241 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.9■□□□□ 0.78
Cdx2P43241 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Cdx2P43241 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx2P43241 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.9■□□□□ 0.78
Cdx2P43241 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdx2P43241 Gm29257-201ENSMUST00000186115 639 ntBASIC19.89■□□□□ 0.77
Cdx2P43241 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdx2P43241 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdx2P43241 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
Cdx2P43241 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Cdx2P43241 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Cdx2P43241 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cdx2P43241 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cdx2P43241 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cdx2P43241 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdx2P43241 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC19.88■□□□□ 0.77
Cdx2P43241 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
Cdx2P43241 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdx2P43241 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Cdx2P43241 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdx2P43241 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Cdx2P43241 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdx2P43241 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cdx2P43241 Gm12251-201ENSMUST00000117893 792 ntBASIC19.87■□□□□ 0.77
Cdx2P43241 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdx2P43241 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdx2P43241 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC19.86■□□□□ 0.77
Cdx2P43241 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx2P43241 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cdx2P43241 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cdx2P43241 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Cdx2P43241 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cdx2P43241 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Cdx2P43241 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cdx2P43241 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cdx2P43241 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cdx2P43241 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cdx2P43241 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.84■□□□□ 0.77
Cdx2P43241 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Cdx2P43241 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.84■□□□□ 0.77
Cdx2P43241 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Cdx2P43241 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Cdx2P43241 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Cdx2P43241 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Cdx2P43241 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cdx2P43241 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cdx2P43241 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Cdx2P43241 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Cdx2P43241 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Cdx2P43241 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cdx2P43241 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Cdx2P43241 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms