Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Ddx56Q9D0R4 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm12241-201ENSMUST00000118330 726 ntBASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gm8399-201ENSMUST00000082300 1117 ntBASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Ddx56Q9D0R4 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm11222-201ENSMUST00000119005 738 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm30285-201ENSMUST00000214614 422 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm9368-201ENSMUST00000219348 831 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm9996-201ENSMUST00000070359 913 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Ddx56Q9D0R4 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.85□□□□□ -0.35
Ddx56Q9D0R4 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 128.8 ms