Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm37472-201ENSMUST00000192342 4052 ntBASIC14.41□□□□□ -0.1
Trim56Q80VI1 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trim56Q80VI1 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Gm14028-201ENSMUST00000117434 479 ntBASIC14.4□□□□□ -0.1
Trim56Q80VI1 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trim56Q80VI1 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Gm5419-201ENSMUST00000119301 527 ntBASIC14.39□□□□□ -0.11
Trim56Q80VI1 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Gm27390-201ENSMUST00000184516 176 ntBASIC14.39□□□□□ -0.11
Trim56Q80VI1 Ighv1-60-201ENSMUST00000195816 405 ntBASIC14.39□□□□□ -0.11
Trim56Q80VI1 Gm18212-201ENSMUST00000211678 889 ntBASIC14.39□□□□□ -0.11
Trim56Q80VI1 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 AC156031.2-201ENSMUST00000213107 3310 ntBASIC14.39□□□□□ -0.11
Trim56Q80VI1 AC171277.1-201ENSMUST00000216902 1441 ntBASIC14.39□□□□□ -0.11
Trim56Q80VI1 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trim56Q80VI1 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.38□□□□□ -0.11
Trim56Q80VI1 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trim56Q80VI1 Gm5706-201ENSMUST00000181525 993 ntBASIC14.38□□□□□ -0.11
Trim56Q80VI1 Gm18893-201ENSMUST00000198416 943 ntBASIC14.38□□□□□ -0.11
Trim56Q80VI1 AY036118-201ENSMUST00000200021 923 ntBASIC14.38□□□□□ -0.11
Trim56Q80VI1 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC14.38□□□□□ -0.11
Trim56Q80VI1 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC14.38□□□□□ -0.11
Trim56Q80VI1 Olfr1347-205ENSMUST00000220413 964 ntBASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms