Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm8227-201ENSMUST00000223306 571 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm3756-201ENSMUST00000169182 1355 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Camkv-204ENSMUST00000194206 2827 ntTSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm8793-201ENSMUST00000183069 1303 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm44260-201ENSMUST00000204946 2094 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Mir877-201ENSMUST00000104738 85 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm15236-201ENSMUST00000117309 379 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm12539-201ENSMUST00000121549 1098 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm14381-201ENSMUST00000122105 414 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm3890-201ENSMUST00000182416 207 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm18827-201ENSMUST00000188341 790 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 AC093022.1-201ENSMUST00000226949 1072 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 n-R5s77-201ENSMUST00000083757 119 ntBASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sh3rf1Q69ZI1 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm15897-201ENSMUST00000117770 1486 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm6754-201ENSMUST00000117124 913 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm4986-201ENSMUST00000119731 549 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm27320-201ENSMUST00000184892 109 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Gm43930-201ENSMUST00000203868 845 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 88.7 ms