Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rnf180Q3U827 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rnf180Q3U827 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rnf180Q3U827 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Rnf180Q3U827 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Rnf180Q3U827 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Rnf180Q3U827 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm43807-201ENSMUST00000200678 1781 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Ighv1-56-201ENSMUST00000103527 294 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Srp14-202ENSMUST00000110862 587 ntTSL 2 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm15197-201ENSMUST00000120526 478 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm14247-201ENSMUST00000120950 237 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm26174-201ENSMUST00000158415 219 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm8459-201ENSMUST00000162504 760 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm17709-201ENSMUST00000174536 1096 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm27826-201ENSMUST00000175282 255 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm26976-201ENSMUST00000182929 908 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm27675-201ENSMUST00000184527 94 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Gm43506-201ENSMUST00000200675 753 ntBASIC14.19□□□□□ -0.14
Rnf180Q3U827 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Rps18-201ENSMUST00000008812 600 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Rnf180Q3U827 AC129931.1-201ENSMUST00000228865 1861 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Eif2c5-201ENSMUST00000125609 1416 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gm14395-201ENSMUST00000120494 563 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Glrx2-206ENSMUST00000145969 924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Capsl-202ENSMUST00000226688 739 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 AC121567.1-201ENSMUST00000227213 842 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gm5468-202ENSMUST00000227851 682 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Clec1b-201ENSMUST00000032262 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Rnf180Q3U827 AC154354.1-203ENSMUST00000225565 1364 ntBASIC14.18□□□□□ -0.14
Rnf180Q3U827 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Rnf180Q3U827 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf180Q3U827 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf180Q3U827 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Rnf180Q3U827 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Rnf180Q3U827 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms