Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Col6a1Q04857 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Col6a1Q04857 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.54□□□□□ -0.24
Col6a1Q04857 Mir7677-201ENSMUST00000184226 67 ntBASIC13.54□□□□□ -0.24
Col6a1Q04857 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.54□□□□□ -0.24
Col6a1Q04857 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Gm3028-201ENSMUST00000213805 1119 ntBASIC13.54□□□□□ -0.24
Col6a1Q04857 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Snora73b-201ENSMUST00000083419 205 ntBASIC13.54□□□□□ -0.24
Col6a1Q04857 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Col6a1Q04857 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Col6a1Q04857 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm10774-201ENSMUST00000188689 204 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm6905-201ENSMUST00000205729 511 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm17827-201ENSMUST00000211825 742 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm6781-201ENSMUST00000038304 1242 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm9873-201ENSMUST00000063891 1097 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.53□□□□□ -0.24
Col6a1Q04857 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Col6a1Q04857 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Col6a1Q04857 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.53□□□□□ -0.24
Col6a1Q04857 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Col6a1Q04857 AC169511.2-201ENSMUST00000226674 2063 ntBASIC13.52□□□□□ -0.24
Col6a1Q04857 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC13.52□□□□□ -0.24
Col6a1Q04857 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
Col6a1Q04857 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.52□□□□□ -0.24
Col6a1Q04857 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Col6a1Q04857 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Col6a1Q04857 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.52□□□□□ -0.24
Col6a1Q04857 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col6a1Q04857 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col6a1Q04857 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Col6a1Q04857 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Col6a1Q04857 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 71.3 ms