Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.84□□□□□ -0.35
Usp4P35123 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC12.84□□□□□ -0.35
Usp4P35123 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC12.84□□□□□ -0.35
Usp4P35123 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Usp4P35123 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.84□□□□□ -0.35
Usp4P35123 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Gm6992-201ENSMUST00000217973 1607 ntBASIC12.84□□□□□ -0.35
Usp4P35123 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Gm38273-201ENSMUST00000194987 2382 ntBASIC12.84□□□□□ -0.35
Usp4P35123 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Usp4P35123 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Usp4P35123 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Usp4P35123 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.83□□□□□ -0.36
Usp4P35123 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Usp4P35123 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC12.83□□□□□ -0.36
Usp4P35123 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.83□□□□□ -0.36
Usp4P35123 Gm27682-201ENSMUST00000183930 110 ntBASIC12.83□□□□□ -0.36
Usp4P35123 Gm38002-201ENSMUST00000193255 180 ntBASIC12.83□□□□□ -0.36
Usp4P35123 Gm37922-201ENSMUST00000195596 455 ntBASIC12.83□□□□□ -0.36
Usp4P35123 Gm37008-201ENSMUST00000195712 319 ntBASIC12.83□□□□□ -0.36
Usp4P35123 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC12.83□□□□□ -0.36
Usp4P35123 Gm43822-201ENSMUST00000200285 476 ntBASIC12.83□□□□□ -0.36
Usp4P35123 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.83□□□□□ -0.36
Usp4P35123 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.83□□□□□ -0.36
Usp4P35123 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.83□□□□□ -0.36
Usp4P35123 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC12.83□□□□□ -0.36
Usp4P35123 Gm10268-201ENSMUST00000085340 555 ntBASIC12.83□□□□□ -0.36
Usp4P35123 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Usp4P35123 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC12.83□□□□□ -0.36
Usp4P35123 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Usp4P35123 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Gm14608-201ENSMUST00000120030 1553 ntBASIC12.82□□□□□ -0.36
Usp4P35123 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.82□□□□□ -0.36
Usp4P35123 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.82□□□□□ -0.36
Usp4P35123 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Gm14723-201ENSMUST00000118686 215 ntBASIC12.82□□□□□ -0.36
Usp4P35123 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC12.82□□□□□ -0.36
Usp4P35123 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC12.82□□□□□ -0.36
Usp4P35123 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Gm25927-201ENSMUST00000175058 117 ntBASIC12.82□□□□□ -0.36
Usp4P35123 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 AC154532.1-201ENSMUST00000227860 965 ntBASIC12.82□□□□□ -0.36
Usp4P35123 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Gm24136-201ENSMUST00000083374 165 ntBASIC12.82□□□□□ -0.36
Usp4P35123 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.82□□□□□ -0.36
Usp4P35123 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usp4P35123 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms