Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.03□□□□□ -0.32
Sf3b1Q99NB9 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Sf3b1Q99NB9 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Gm22133-201ENSMUST00000102082 109 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Gm14760-201ENSMUST00000121831 999 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Gm43947-201ENSMUST00000203019 959 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 AC131330.1-201ENSMUST00000227814 1015 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 AC123619.2-202ENSMUST00000225097 1568 ntBASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Sf3b1Q99NB9 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Gm17827-201ENSMUST00000211825 742 ntBASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Gm8959-201ENSMUST00000213150 571 ntBASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Sf3b1Q99NB9 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Gm44942-201ENSMUST00000096093 2072 ntBASIC13□□□□□ -0.33
Sf3b1Q99NB9 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Gm5847-201ENSMUST00000178959 1595 ntBASIC13□□□□□ -0.33
Sf3b1Q99NB9 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Sf3b1Q99NB9 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC13□□□□□ -0.33
Sf3b1Q99NB9 Gm9630-201ENSMUST00000178304 885 ntBASIC13□□□□□ -0.33
Sf3b1Q99NB9 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms