Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.77□□□□□ -0.53
Lsm1Q8VC85 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Gm24830-201ENSMUST00000102024 166 ntBASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Gm26232-201ENSMUST00000083360 166 ntBASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 CT573086.2-201ENSMUST00000227277 4992 ntBASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Lsm1Q8VC85 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Lsm1Q8VC85 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lsm1Q8VC85 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lsm1Q8VC85 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lsm1Q8VC85 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms