Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Gm9083-201ENSMUST00000120423 819 ntBASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ushbp1Q8R370 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm25214-201ENSMUST00000104573 129 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm2546-201ENSMUST00000182630 991 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 AA914427-201ENSMUST00000193194 1166 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm42599-201ENSMUST00000201308 469 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gm10076-201ENSMUST00000073238 384 ntBASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ushbp1Q8R370 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Gm22334-201ENSMUST00000158070 133 ntBASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Gm24514-201ENSMUST00000174961 285 ntBASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Gm5950-201ENSMUST00000213337 772 ntBASIC13.74□□□□□ -0.21
Ushbp1Q8R370 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ushbp1Q8R370 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms