Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm10288-201ENSMUST00000084614 537 ntBASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 AC137842.1-201ENSMUST00000227896 2064 ntBASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm14585-201ENSMUST00000120713 634 ntBASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Smim1-206ENSMUST00000132541 490 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm43184-201ENSMUST00000197247 542 ntBASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Gm6430-201ENSMUST00000054664 1248 ntBASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a6Q8C6K9 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm24231-201ENSMUST00000104315 133 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm8737-201ENSMUST00000122208 642 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm43520-201ENSMUST00000197996 164 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm3619-201ENSMUST00000219947 775 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm44958-201ENSMUST00000203734 736 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm26448-201ENSMUST00000082446 203 ntBASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a6Q8C6K9 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Col6a6Q8C6K9 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms