Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm12291-201ENSMUST00000121627 311 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm37489-201ENSMUST00000191883 159 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm38158-201ENSMUST00000194617 339 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Gm19163-201ENSMUST00000223313 780 ntBASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
Sh3rf1Q69ZI1 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Sh3rf1Q69ZI1 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Gm15808-201ENSMUST00000119046 604 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Gm13786-201ENSMUST00000122371 333 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Gm5896-201ENSMUST00000189662 1024 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 AC022775.2-201ENSMUST00000227885 646 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Mir339-201ENSMUST00000083659 96 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 CT009713.10-201ENSMUST00000225013 1986 ntBASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Sh3rf1Q69ZI1 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm14760-201ENSMUST00000121831 999 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm12363-201ENSMUST00000122250 668 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm6621-201ENSMUST00000193251 772 ntBASIC12.44□□□□□ -0.42
Sh3rf1Q69ZI1 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 85.1 ms